Using COARE - High-Performance Computing (HPC) 

Page / - last modified by tonee on Wed, 03/13/2024, 11:24 AM 

High-Performance Computing (HPC) 
last modified by tonee
on Wed, 03/13/2024, 11:24 AM

Table of Contents

The Saliksik High-Performance Computing (HPC) cluster provides researchers with computational power necessary for computationally intensive requirements such as molecular simulations, quantum mechanics calculations, among others.
Basic HPC Usage
•	Introduction
•	Applications for Windows
•	Accessing the HPC
•	Generating SSH Key Pairs
•	Terminal
•	Graphical
•	Logging In
•	Terminal
•	Interactive Command
•	SSH Configuration File
•	Graphical
•	HPC Layout
•	Storage Quotas
•	Uploading and Downloading Files
•	Terminal
•	Using scp
•	Using rsync
•	Graphical
•	Modules and Environments
•	Module Commands
•	Anaconda
•	Configure conda and mamba
•	Initialize conda and mamba
•	Change the Default Locations
•	Manage Environments
•	Create Environments
•	List Environments
•	Activate an Environment
•	Remove an Environment
•	Manage Packages
•	Install and Remove Packages
•	List Installed Packages
•	SLURM
•	Partitions and Quality-of-Service (QOS)
•	Job Parameters
•	Required Parameters
•	Optional Parameters
•	Job Script
•	Job Management
•	Activity
•	Create Environment
•	Install Additional Packages
•	Compile and Execute Code
•	Benchmarking
•	Conclusion
•	Notes